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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9135178_9135347_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9135178 - 9135347
Intron Length:
170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCCGCG
5'SS Class:
major
3'SS Sequence:
TCCTGTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAG
U12 Branch Point Sequence:
TTTTCCTGTCCC
Flanking Amino Acid:
LLKAAIKETLRLHPVAVTLQ
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.8
0.33
1.3
51.7
44.2
Major BPS
49.1
-0
1.5
57.8
39
Major PPT
74.6
0.55
0.8
68.9
31.6
Minor 5ss
40.8
-1
3.5
56.2
48.2
Minor BPS
44
-0.4
3.7
75.69
40.7

Associated Gene:

Gene:
CYP11A1
Ensembl Gene ID:
ENSAPLG00000031075
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026744
9133163 - 9137305
4143