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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9135515_9135585_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9135515 - 9135585
Intron Length:
71

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTCAGGGGC
5'SS Class:
major
3'SS Sequence:
TGCCCCGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAG
U12 Branch Point Sequence:
CGGCGCTGAGCC
Flanking Amino Acid:
TEMMAGGVDTTSVTLQWAMF
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.8
0.33
1.4
57.8
41.2
Major BPS
46
-0.2
1.6
40.4
42.3
Major PPT
69
0.43
0.9
61.5
34.9
Minor 5ss
25.5
-2.8
3.3
33.5
42
Minor BPS
40.9
-0.7
2
45.46
42.7

Associated Gene:

Gene:
CYP11A1
Ensembl Gene ID:
ENSAPLG00000031075
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026744
9133163 - 9137305
4143