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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9135747_9135866_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9135747 - 9135866
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCTCT
5'SS Class:
major
3'SS Sequence:
CTCTTTGCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCACCAT
U12 Branch Point Sequence:
CCACCCGGCACC
Flanking Amino Acid:
VHAWDAIFTQADKCIQNVYR
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
68.4
39.3
Major BPS
44.2
-0.3
1.4
48.7
44.6
Major PPT
76.1
0.59
0.8
68.5
37.3
Minor 5ss
40.6
-1
3
48.7
47
Minor BPS
38.5
-0.9
2.3
45.12
43

Associated Gene:

Gene:
CYP11A1
Ensembl Gene ID:
ENSAPLG00000031075
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026744
9133163 - 9137305
4143