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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9136555_9136700_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9136555 - 9136700
Intron Length:
146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGCCCC
5'SS Class:
major
3'SS Sequence:
TTGTGACCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
TGCCCCCCACCC
Flanking Amino Acid:
YRNKPYGVLLKTGEAWRSDR
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
59.5
39.8
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
69.9
0.45
0.9
63.1
38.6
Minor 5ss
35.4
-1.7
3
43.7
37.6
Minor BPS
42.8
-0.5
2
54.01
43.4

Associated Gene:

Gene:
CYP11A1
Ensembl Gene ID:
ENSAPLG00000031075
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026744
9133163 - 9137305
4143