Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9142951_9143646_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9142951 - 9143646

Intron Length:

696

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGTGAA

5'SS Class:

strong_major

3'SS Sequence:

TCTCTCCTAGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTCAT

U12 Branch Point Sequence:

CTCTCATCAAAC

Flanking Amino Acid:

GKCQKGKVTEDTYQNITVVP

Intron Amino Acid Position:

647

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.2

0.9

0.8

79.4

28.9

Major BPS

82.6

0.81

0.9

83.3

27.7

Major PPT

78.1

0.63

0.8

74.2

29.3

Minor 5ss

38.1

-1.3

3.1

48.5

47.7

Minor BPS

48.7

-0.1

1.9

61.17

43.7

Associated Gene:

Gene:

SEMA7A

Ensembl Gene ID:

ENSAPLG00000011197

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033251

9140987 - 9163221

22235

ENSAPLT00000011651

9142524 - 9170089

27566

ENSAPLT00000011199

9142604 - 9170089

27486

ENSAPLT00000048054

9140987 - 9170089

29103