Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9143715_9144785_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9143715 - 9144785

Intron Length:

1071

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGGGTGTC

5'SS Class:

major

3'SS Sequence:

TCCCGTCTGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

GCGTTGTTAATG

Flanking Amino Acid:

IQSMILDHERGGAPEPGPEP

Intron Amino Acid Position:

611

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.1

0.55

1.1

66.7

38.9

Major BPS

84.4

0.85

34.5

Major PPT

67.9

0.4

60.8

40.3

Minor 5ss

-2.3

3.5

34.1

42.2

Minor BPS

-0.2

2.1

50.75

44.3

Associated Gene:

Gene:

SEMA7A

Ensembl Gene ID:

ENSAPLG00000011197

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011651

9142524 - 9170089

27566