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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9144902_9146443_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9144902 - 9146443
Intron Length:
1542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGCGA
5'SS Class:
major
3'SS Sequence:
TCTTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTCAC
U12 Branch Point Sequence:
GCCTCCTTCACC
Flanking Amino Acid:
QQYTVLYLATDKGSIHKVVE
Intron Amino Acid Position:
535

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.1
53.6
45
Major BPS
65.1
0.38
1.1
68.9
36.5
Major PPT
92.4
0.95
0.6
88.1
21.7
Minor 5ss
29.1
-2.4
3.4
39.5
45.7
Minor BPS
62.5
0.38
1.8
66.74
45

Associated Gene:

Gene:
SEMA7A
Ensembl Gene ID:
ENSAPLG00000011197
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011199
9142604 - 9170089
27486
ENSAPLT00000048054
9140987 - 9170089
29103
ENSAPLT00000033251
9140987 - 9163221
22235
ENSAPLT00000011651
9142524 - 9170089
27566