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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9146643_9147287_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9146643 - 9147287
Intron Length:
645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CCTCCTGGTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CTGCCTCTGACG
Flanking Amino Acid:
GPNPEIKPGQCVSSGQHTPS
Intron Amino Acid Position:
469

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
69.7
0.44
1
64.1
36.6
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
47.6
-0.3
1.8
52.4
42.7

Associated Gene:

Gene:
SEMA7A
Ensembl Gene ID:
ENSAPLG00000011197
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048054
9140987 - 9170089
29103
ENSAPLT00000033251
9140987 - 9163221
22235
ENSAPLT00000011651
9142524 - 9170089
27566
ENSAPLT00000011199
9142604 - 9170089
27486