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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9147397_9147581_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9147397 - 9147581
Intron Length:
185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
TTGTTGCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
CCTCCCTGACCC
Flanking Amino Acid:
SKVYGLFTNTWGSSAVCVYS
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
60.2
38.7
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
74.7
0.56
0.9
66.2
40.8
Minor 5ss
24.3
-3
3.3
28.8
38.7
Minor BPS
49.8
-0
1.8
60.44
44.6

Associated Gene:

Gene:
SEMA7A
Ensembl Gene ID:
ENSAPLG00000011197
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033251
9140987 - 9163221
22235
ENSAPLT00000011651
9142524 - 9170089
27566
ENSAPLT00000011199
9142604 - 9170089
27486
ENSAPLT00000048054
9140987 - 9170089
29103