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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9147761_9147986_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9147761 - 9147986
Intron Length:
226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGTGG
5'SS Class:
major
3'SS Sequence:
TTCTCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
CAACCCCTGACT
Flanking Amino Acid:
NISRVAQLCKEDKGGTSSLS
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.5
0.34
1.3
52.4
46.9
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
78
0.63
0.7
69.8
31
Minor 5ss
40.6
-1
3.4
56
48.2
Minor BPS
52.6
0.16
1.7
67.61
42.6

Associated Gene:

Gene:
SEMA7A
Ensembl Gene ID:
ENSAPLG00000011197
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048054
9140987 - 9170089
29103
ENSAPLT00000033251
9140987 - 9163221
22235
ENSAPLT00000011651
9142524 - 9170089
27566
ENSAPLT00000011199
9142604 - 9170089
27486