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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9148127_9149434_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9148127 - 9149434
Intron Length:
1308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTCTG
5'SS Class:
major
3'SS Sequence:
CTTCCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
GTTTTCTGACGG
Flanking Amino Acid:
PDANSLVVVDYPQFVKATTL
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1.1
66
45.2
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
86.7
0.83
0.7
84.2
23.6
Minor 5ss
40.7
-1
3.1
60.3
43.9
Minor BPS
46.5
-0.4
2
56.31
45

Associated Gene:

Gene:
SEMA7A
Ensembl Gene ID:
ENSAPLG00000011197
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011199
9142604 - 9170089
27486