About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9149520_9149867_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9149520 - 9149867
Intron Length:
348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTACGCTGG
5'SS Class:
major
3'SS Sequence:
TGTCCTTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
CTCACCTTATCT
Flanking Amino Acid:
GACAPTCWNLTQRQKGSPQD
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.47
1.1
53.5
46
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
77.4
0.62
0.8
69.3
36.9
Minor 5ss
42.3
-0.8
3.1
52.8
46.3
Minor BPS
63
0.49
1.7
76.38
46

Associated Gene:

Gene:
SEMA7A
Ensembl Gene ID:
ENSAPLG00000011197
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033251
9140987 - 9163221
22235
ENSAPLT00000011651
9142524 - 9170089
27566
ENSAPLT00000011199
9142604 - 9170089
27486
ENSAPLT00000048054
9140987 - 9170089
29103