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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9150272_9150913_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9150272 - 9150913
Intron Length:
642

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGGCG
5'SS Class:
major
3'SS Sequence:
TCTTTTATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTCTCTTTTATT
Flanking Amino Acid:
HDFATSENYVEDFPVENGGQ
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
63.1
41.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
88.7
0.87
0.7
81.4
34.9
Minor 5ss
29.7
-2.3
3.5
35.7
42.1
Minor BPS
68.7
0.67
1.6
83.34
38.2

Associated Gene:

Gene:
SEMA7A
Ensembl Gene ID:
ENSAPLG00000011197
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048054
9140987 - 9170089
29103
ENSAPLT00000033251
9140987 - 9163221
22235
ENSAPLT00000011651
9142524 - 9170089
27566
ENSAPLT00000011199
9142604 - 9170089
27486