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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9168728_9169852_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9168728 - 9169852
Intron Length:
1125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGAACGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
TTCTCTTTGAAC
Flanking Amino Acid:
ELMGLLLRSQKLVAPVSPCT
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
73.3
36.4
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
71.5
0.48
1
66.4
38.5
Minor 5ss
33.6
-1.9
3.7
49.4
47.1
Minor BPS
67.9
0.55
1.4
74.48
36.5

Associated Gene:

Gene:
SEMA7A
Ensembl Gene ID:
ENSAPLG00000011197
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011199
9142604 - 9170089
27486
ENSAPLT00000048054
9140987 - 9170089
29103
ENSAPLT00000011651
9142524 - 9170089
27566