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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9174398_9174719_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9174398 - 9174719
Intron Length:
322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGGC
5'SS Class:
major
3'SS Sequence:
TTCCTGTCCGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCGCAC
U12 Branch Point Sequence:
TCGCACCTACTC
Flanking Amino Acid:
LQASGQPSLQSQWQPQLQQL
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1.3
72.7
38.2
Major BPS
49.1
-0
1.3
60.7
37.6
Major PPT
73.4
0.53
0.8
69.1
31.5
Minor 5ss
28.4
-2.5
3
35.8
40.9
Minor BPS
41.7
-0.6
2
49.17
41.2

Associated Gene:

Gene:
UBL7
Ensembl Gene ID:
ENSAPLG00000009465
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009862
9174090 - 9178113
4024