About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9175144_9175527_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9175144 - 9175527
Intron Length:
384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
CGGGCACTGACA
Flanking Amino Acid:
LSDDEDDFHQSTRSTPSSST
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
72.5
37.5
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
86.2
0.81
0.7
80.7
24.5
Minor 5ss
33.1
-1.9
3.2
44.4
43.3
Minor BPS
42.5
-0.6
2
48.87
41.7

Associated Gene:

Gene:
UBL7
Ensembl Gene ID:
ENSAPLG00000009465
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009862
9174090 - 9178113
4024