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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9177022_9177423_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9177022 - 9177423
Intron Length:
402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
ATGCCTGGGAGC
Flanking Amino Acid:
KSWPEPDQKPEPVDKVAAVR
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
86.1
0.81
0.7
84.7
23
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
37.5
-1
2.1
45.42
37.4

Associated Gene:

Gene:
UBL7
Ensembl Gene ID:
ENSAPLG00000009465
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009862
9174090 - 9178113
4024