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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9183347_9191236_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9183347 - 9191236
Intron Length:
7890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
CCTTTTTCAGCC
Flanking Amino Acid:
RWRLDEQLKQNGSVTWSDEG
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
73.7
0.53
0.7
66.3
30
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
48
-0.1
1.8
57.33
42.2

Associated Gene:

Gene:
ARID3B
Ensembl Gene ID:
ENSAPLG00000024634
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039168
9182771 - 9212397
29627