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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9191309_9192759_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9191309 - 9192759
Intron Length:
1451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTGCG
5'SS Class:
major
3'SS Sequence:
TTTCCCCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
GREISRDFAKLYELDSDPER
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1.3
69.7
41.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86
0.81
0.7
77.5
31.2
Minor 5ss
28.4
-2.5
2.9
33.2
41.8
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
ARID3B
Ensembl Gene ID:
ENSAPLG00000024634
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039168
9182771 - 9212397
29627