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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9192833_9204129_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9192833 - 9204129
Intron Length:
11297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTCCAT
U12 Branch Point Sequence:
TCTCCCTCCATG
Flanking Amino Acid:
DDLFIFMQKRGTPINRIPIM
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.4
38.7
Major BPS
52.4
0.06
1.3
64
41.7
Major PPT
84
0.76
0.8
78.1
30.7
Minor 5ss
26.1
-2.7
2.9
22.8
37.4
Minor BPS
47.8
-0.3
2
56.83
45

Associated Gene:

Gene:
ARID3B
Ensembl Gene ID:
ENSAPLG00000024634
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039168
9182771 - 9212397
29627