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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9218872_9219258_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9218872 - 9219258
Intron Length:
387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTGAC
5'SS Class:
major
3'SS Sequence:
TCCCCCCGTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
GTTTTTTTCCCT
Flanking Amino Acid:
MAYQLCHALRFLHDNQLTHT
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
73.9
29.8
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
70.8
0.47
0.9
64.8
30.7
Minor 5ss
30
-2.3
3.2
39
39.9
Minor BPS
42.9
-0.4
3.5
75.46
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009101
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009493
9218718 - 9221094
2377