Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9220704_9220908_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9220704 - 9220908

Intron Length:

205

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAGGTGGC

5'SS Class:

major

3'SS Sequence:

CCTTCTGTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTCAC

U12 Branch Point Sequence:

AGAGCCTACACC

Flanking Amino Acid:

YVQENCKPLRTYMLHDSLEH

Intron Amino Acid Position:

212

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.7

0.58

1.1

64.7

Major BPS

76.2

0.65

0.9

77.4

26.5

Major PPT

82.4

0.73

0.8

79.8

32.2

Minor 5ss

31.2

-2.1

3.4

34.3

Minor BPS

45.1

-0.4

2.1

54.11

43.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009101

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009493

9218718 - 9221094

2377