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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9235856_9242405_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9235856 - 9242405
Intron Length:
6550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TATTTTTGTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
GTATTTTCAACT
Flanking Amino Acid:
SKGFRRRHNSWSSSSRHPNQ
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
71.2
40.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
81.3
0.7
0.9
81.5
35.9
Minor 5ss
36.8
-1.5
2.9
52.3
44.3
Minor BPS
63.8
0.51
1.5
77.55
38.7

Associated Gene:

Gene:
EDC3
Ensembl Gene ID:
ENSAPLG00000008957
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009335
9224478 - 9244883
20406