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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9242720_9244121_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9242720 - 9244121
Intron Length:
1402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TGTTTTTCTATT
Flanking Amino Acid:
VKCLVPEVTFRAGDITELKI
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1.1
77.3
37.8
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
89.3
0.88
0.7
88.9
28.2
Minor 5ss
30.8
-2.2
3.1
41.8
44.7
Minor BPS
49.7
0.06
1.8
71.98
39.2

Associated Gene:

Gene:
EDC3
Ensembl Gene ID:
ENSAPLG00000008957
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009335
9224478 - 9244883
20406