Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9254533_9261262_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9254533 - 9261262

Intron Length:

6730

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTGAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

GTCTCCTCCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAG

U12 Branch Point Sequence:

GATTCAATAACC

Flanking Amino Acid:

LISELLKIPGLWKGRSDPVL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.9

0.8

0.9

79.3

31.1

Major BPS

72.4

0.56

1.5

71.4

45.1

Major PPT

74.2

0.55

0.8

65.5

36.1

Minor 5ss

29.2

-2.4

2.5

36.8

Minor BPS

57.8

0.23

1.9

71.39

38.7

Associated Gene:

Gene:

PPCDC

Ensembl Gene ID:

ENSAPLG00000015222

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015867

9254380 - 9267917

13538