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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9258862_9263455_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9258862 - 9263455
Intron Length:
4594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAACAT
U12 Branch Point Sequence:
CGAGCCCAACCT
Flanking Amino Acid:
PLYSDEDEWQTCVIRAWDLR
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81.3
32.8
Major BPS
54.4
0.11
1
61.4
34.3
Major PPT
85.5
0.8
0.8
80.1
31.8
Minor 5ss
30.6
-2.2
2.6
36.7
40.4
Minor BPS
39.7
-0.7
2.2
53.76
47.2

Associated Gene:

Gene:
PPCDC
Ensembl Gene ID:
ENSAPLG00000015222
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029718
9254380 - 9267917
13538