Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9284506_9284963_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9284506 - 9284963

Intron Length:

458

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAGGTAGC

5'SS Class:

major

3'SS Sequence:

TTCCTTCTCCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GACACAT

U12 Branch Point Sequence:

ATGCCCACCACC

Flanking Amino Acid:

LWHHSIRQQLAPSPPLLVGS

Intron Amino Acid Position:

889

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.6

0.63

1.1

67.4

Major BPS

52.1

0.05

1.2

37.5

Major PPT

83.4

0.75

0.7

76.4

32.2

Minor 5ss

35.2

-1.7

45.6

42.8

Minor BPS

43.1

-0.5

2.1

55.83

Associated Gene:

Gene:

C15orf39

Ensembl Gene ID:

ENSAPLG00000017861

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028515

9281781 - 9286523

4743