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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9285218_9285523_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
9285218 - 9285523
Intron Length:
306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTCTTTTTATTT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86.9
30.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.6
0.91
0.7
89.1
25.9
Minor 5ss
34.7
-1.7
3.1
49.5
46.7
Minor BPS
57.7
0.32
1.6
71.36
40.7

Associated Gene:

Gene:
C15orf39
Ensembl Gene ID:
ENSAPLG00000017861
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028515
9281781 - 9286523
4743