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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9366766_9367013_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9366766 - 9367013
Intron Length:
248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTGTC
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TCTCTTCTAAAG
Flanking Amino Acid:
RIVPAGRAPQGAAEGLPTLV
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
72.3
37.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
88.2
0.86
0.6
81.7
30.3
Minor 5ss
42.9
-0.8
3.1
52.3
45
Minor BPS
47.1
-0.3
1.8
54.14
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015295
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015947
9366587 - 9369706
3120