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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9367134_9367379_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9367134 - 9367379
Intron Length:
246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGTTT
5'SS Class:
strong_major
3'SS Sequence:
CATCTCTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
CCTCTCCTACCA
Flanking Amino Acid:
RLRRDISSRQGGSSRAAEAE
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
79.5
36.8
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
74.9
0.56
0.8
73.2
31.3
Minor 5ss
41.3
-1
3.7
63.6
48.1
Minor BPS
46
-0.3
1.9
56.54
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015295
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015947
9366587 - 9369706
3120