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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9367526_9367593_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9367526 - 9367593
Intron Length:
68

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
GGCTCTGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTCAC
U12 Branch Point Sequence:
GAGGGCTCACAG
Flanking Amino Acid:
KACSFNKASSLWAPVEGTGD
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
68.2
36.6
Major BPS
52.1
0.05
1.3
57
41.8
Major PPT
71
0.47
1
61
44.6
Minor 5ss
34.5
-1.8
2.8
48.2
40.4
Minor BPS
34
-1.3
2
30.53
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015295
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015947
9366587 - 9369706
3120