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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9367686_9367790_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9367686 - 9367790
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGATGT
5'SS Class:
major
3'SS Sequence:
ATTTCCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAA
U12 Branch Point Sequence:
TTTGGCTTAATT
Flanking Amino Acid:
FKFAGDDRNLIYITCHLKVS
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
0.9
70.3
36.4
Major BPS
62.4
0.31
1
64
32.1
Major PPT
83.5
0.75
0.8
74.4
35.8
Minor 5ss
34.4
-1.8
3.2
44.3
45.4
Minor BPS
69.5
0.69
1.9
87.41
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015295
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015947
9366587 - 9369706
3120