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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9368458_9368540_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9368458 - 9368540
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTGAT
U12 Branch Point Sequence:
TCTCTGCTGACA
Flanking Amino Acid:
AVVPIECHYPRRSNVSSNAV
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
62.3
43.9
Major BPS
66.1
0.4
1.3
57.1
49.4
Major PPT
75.7
0.58
0.8
72.8
32
Minor 5ss
32.7
-2
3
39.3
46.1
Minor BPS
44.3
-0.4
2.3
59.97
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015295
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015947
9366587 - 9369706
3120