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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9368660_9369298_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9368660 - 9369298
Intron Length:
639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
ATGTCCCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAG
U12 Branch Point Sequence:
TTTTGCTGACTT
Flanking Amino Acid:
GLHECGSTLQMTPDSLIYKT
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
66.5
41.6
Major BPS
64.3
0.36
1.6
74
41.2
Major PPT
76.5
0.6
0.9
66.7
40
Minor 5ss
30.7
-2.2
3.2
37.8
47.1
Minor BPS
53.6
0.19
2.1
80.5
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015295
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015947
9366587 - 9369706
3120