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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9379378_9379722_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9379378 - 9379722
Intron Length:
345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAC
U12 Branch Point Sequence:
ACCTCCGTCACT
Flanking Amino Acid:
SSAAVTLQVAAPYSKPNLNL
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.8
75
35.2
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
87.6
0.85
0.6
85
22.6
Minor 5ss
26.7
-2.7
3.3
38.5
46.6
Minor BPS
48.6
-0
2.4
69.5
47.5

Associated Gene:

Gene:
CD276
Ensembl Gene ID:
ENSAPLG00000030629
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043689
9376997 - 9380615
3619