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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9395955_9421717_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9395955 - 9421717
Intron Length:
25763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAAGTCAG
5'SS Class:
major
3'SS Sequence:
CCTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGCTATTTAATG
Flanking Amino Acid:
LPGDPQARGGQPRINASEDV
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.4
60.1
46.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
90.7
0.91
0.6
83.6
31.4
Minor 5ss
35.4
-1.7
2.9
45.9
42.4
Minor BPS
59.1
0.15
1.6
60.65
41.8

Associated Gene:

Gene:
NPTN
Ensembl Gene ID:
ENSAPLG00000015581
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023617
9395616 - 9444612
48997