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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9416975_9421717_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9416975 - 9421717
Intron Length:
4743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTTCG
5'SS Class:
major
3'SS Sequence:
CCTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGCTATTTAATG
Flanking Amino Acid:
RAQATISVLQKPRINASEDV
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1
62.1
39.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
90.7
0.91
0.6
83.6
31.4
Minor 5ss
36.3
-1.5
2.8
38.2
40.5
Minor BPS
59.1
0.15
1.6
60.65
41.8

Associated Gene:

Gene:
NPTN
Ensembl Gene ID:
ENSAPLG00000015581
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016257
9416647 - 9444612
27966