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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9420402_9421717_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9420402 - 9421717
Intron Length:
1316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGCTATTTAATG
Flanking Amino Acid:
MSGEPRINASEDV
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
77.7
30.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
90.7
0.91
0.6
83.6
31.4
Minor 5ss
27.6
-2.6
3.3
39.2
46.2
Minor BPS
59.1
0.15
1.6
60.65
41.8

Associated Gene:

Gene:
NPTN
Ensembl Gene ID:
ENSAPLG00000015581
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028469
9420392 - 9444612
24221