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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9421887_9433461_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9421887 - 9433461
Intron Length:
11575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
CAGCTTGTAAAT
Flanking Amino Acid:
LEKFQTLQNTTVPDITGHKR
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
79
35.3
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
88.9
0.87
0.6
85.2
22.1
Minor 5ss
40.5
-1.1
3
54
37
Minor BPS
43.1
-0.4
2
54.76
41.3

Associated Gene:

Gene:
NPTN
Ensembl Gene ID:
ENSAPLG00000015581
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042936
9421718 - 9444612
22895