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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9433596_9435125_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9433596 - 9435125
Intron Length:
1530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTCATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAG
U12 Branch Point Sequence:
TCTTCTTTCATC
Flanking Amino Acid:
WRKKVNGVFEDINNSSGRFF
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
82.1
31
Major BPS
67.8
0.44
1.5
75.9
36.3
Major PPT
81.6
0.71
0.8
81.7
28.6
Minor 5ss
32.6
-2
3.1
42.1
45
Minor BPS
64.6
0.44
1.7
73.34
38.7

Associated Gene:

Gene:
NPTN
Ensembl Gene ID:
ENSAPLG00000015581
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042936
9421718 - 9444612
22895
ENSAPLT00000028469
9420392 - 9444612
24221
ENSAPLT00000023617
9395616 - 9444612
48997
ENSAPLT00000016257
9416647 - 9444612
27966