About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9435400_9444036_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9435400 - 9444036
Intron Length:
8637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTGAA
U12 Branch Point Sequence:
TGCACCTGAATT
Flanking Amino Acid:
KRKRPDEVPDDDESAGPMKT
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
76.5
39.2
Major BPS
60.8
0.27
1
51.3
35.5
Major PPT
79.6
0.67
0.9
73.7
36.2
Minor 5ss
36.8
-1.5
3.3
50
46.2
Minor BPS
62.7
0.48
1.5
74.63
42

Associated Gene:

Gene:
NPTN
Ensembl Gene ID:
ENSAPLG00000015581
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028469
9420392 - 9444612
24221
ENSAPLT00000023617
9395616 - 9444612
48997
ENSAPLT00000016257
9416647 - 9444612
27966
ENSAPLT00000042936
9421718 - 9444612
22895