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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9444059_9444538_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9444059 - 9444538
Intron Length:
480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGTAATTTAATG
Flanking Amino Acid:
VPDDDESAGPMKTNSTNNHK
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
77.1
31.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
87.1
0.84
0.7
80.8
31.2
Minor 5ss
35.4
-1.7
3.2
46.1
42.2
Minor BPS
57.2
0.09
1.6
61.87
40.1

Associated Gene:

Gene:
NPTN
Ensembl Gene ID:
ENSAPLG00000015581
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042936
9421718 - 9444612
22895
ENSAPLT00000028469
9420392 - 9444612
24221
ENSAPLT00000023617
9395616 - 9444612
48997
ENSAPLT00000016257
9416647 - 9444612
27966