About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9455957_9469409_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9455957 - 9469409
Intron Length:
13453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
CCTGCTTTATTT
Flanking Amino Acid:
FFISHGRTVLEGFSLIDCHK
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
34.8
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
83.6
0.76
0.8
81.4
35
Minor 5ss
39.7
-1.2
2.8
46.7
43.9
Minor BPS
52.4
0.15
1.7
66.47
45.5

Associated Gene:

Gene:
REC114
Ensembl Gene ID:
ENSAPLG00000015657
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016313
9446177 - 9470558
24382