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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9517985_9545663_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9517985 - 9545663
Intron Length:
27679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAATCT
5'SS Class:
major
3'SS Sequence:
TCTTGCTGTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
CATAGCTGATCT
Flanking Amino Acid:
FWIIHPYSDFRFYWDLTMLL
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
68.6
37
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
77.1
0.61
1
69
41.9
Minor 5ss
38.9
-1.3
3.4
57.4
46.7
Minor BPS
44.7
-0.3
2.1
62.83
46.6

Associated Gene:

Gene:
HCN4
Ensembl Gene ID:
ENSAPLG00000011270
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011722
9517839 - 9615438
97600