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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9546088_9574028_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9546088 - 9574028
Intron Length:
27941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TGCCATCTAATC
Flanking Amino Acid:
LIRYIHQWEEIFHMTYDLAS
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.1
38.4
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
80.4
0.68
0.8
74.3
30.8
Minor 5ss
33.3
-1.9
2.8
40
45.7
Minor BPS
45.7
-0.3
1.8
54.19
37.6

Associated Gene:

Gene:
HCN4
Ensembl Gene ID:
ENSAPLG00000011270
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011722
9517839 - 9615438
97600