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Intron Name: Anas_platyrhynchos_platyrhynchos_11_9574191_9581881_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9574191 - 9581881

Intron Length:

7691

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

TCTGTCTCTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTAAA

U12 Branch Point Sequence:

GTCTGTCTATCT

Flanking Amino Acid:

DCWVSLNRMVNDSWGKQYSY

Intron Amino Acid Position:

245

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.7

0.91

0.8

80.6

31.8

Major BPS

70.1

0.5

1.1

69.9

35.3

Major PPT

79.7

0.67

0.8

77.7

31.1

Minor 5ss

35.5

-1.6

3.3

47.5

42.3

Minor BPS

44.2

-0.3

2.2

64.82

45.8

Associated Gene:

Gene:

HCN4

Ensembl Gene ID:

ENSAPLG00000011270

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011722

9517839 - 9615438

97600