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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9598507_9613840_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9598507 - 9613840
Intron Length:
15334

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAG
U12 Branch Point Sequence:
CTTTCCCTACAG
Flanking Amino Acid:
TVALDRLDRIGKKNSILLHK
Intron Amino Acid Position:
502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
55.5
0.14
1.5
65.8
41
Major PPT
80.1
0.68
0.8
73.1
32
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
48.5
-0.2
2.1
61.25
46.2

Associated Gene:

Gene:
HCN4
Ensembl Gene ID:
ENSAPLG00000011270
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011722
9517839 - 9615438
97600