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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9629986_9632347_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9629986 - 9632347
Intron Length:
2362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAGGTACT
5'SS Class:
major
3'SS Sequence:
CCATCTCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTGTCAGTAACT
Flanking Amino Acid:
TTRMLEDSESNYEPDELTKE
Intron Amino Acid Position:
1423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.7
0.28
1.4
66.3
45.2
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
71.2
0.48
0.8
64.6
30.7
Minor 5ss
37.9
-1.4
3
47.4
41.4
Minor BPS
60.1
0.4
2.3
85.11
41.3

Associated Gene:

Gene:
NEO1
Ensembl Gene ID:
ENSAPLG00000015725
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041144
9629902 - 9759568
129667
ENSAPLT00000040772
9629902 - 9759662
129761
ENSAPLT00000016455
9629902 - 9759662
129761
ENSAPLT00000016454
9629902 - 9759662
129761
ENSAPLT00000046122
9629902 - 9759662
129761