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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9633060_9639027_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9633060 - 9639027
Intron Length:
5968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTCAG
5'SS Class:
major
3'SS Sequence:
TTGTCTGTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
TAAACCACAGCT
Flanking Amino Acid:
MMPFDSQPPQQSVRNTPSTD
Intron Amino Acid Position:
1239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1.4
59.7
46.7
Major BPS
62
0.3
1
62.3
30.4
Major PPT
77.8
0.63
0.9
73.4
37.1
Minor 5ss
34.5
-1.8
2.9
36.8
40.5
Minor BPS
45.1
-0.2
2
65.11
44.1

Associated Gene:

Gene:
NEO1
Ensembl Gene ID:
ENSAPLG00000015725
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046122
9629902 - 9759662
129761