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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9634807_9639027_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9634807 - 9639027
Intron Length:
4221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTCAG
5'SS Class:
major
3'SS Sequence:
TATTCATTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATTCATTCACA
Flanking Amino Acid:
MMPFDSQPPQPVISAHPIHS
Intron Amino Acid Position:
1239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1.4
59.7
46.7
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
79.2
0.66
0.9
73.1
35.9
Minor 5ss
34.5
-1.8
2.9
36.8
40.5
Minor BPS
62.5
0.39
2
78.05
38.2

Associated Gene:

Gene:
NEO1
Ensembl Gene ID:
ENSAPLG00000015725
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040772
9629902 - 9759662
129761
ENSAPLT00000016455
9629902 - 9759662
129761
ENSAPLT00000016454
9629902 - 9759662
129761